Avivi, A., Brodsky, L., Nevo, E., and Band, M. R. 2006. Differential expression profiling of the blind subterranean mole rat Spalax ehrenbergi superspecies: bio-prospecting for hypoxia tolerance. Physiol Genomics.
Band, M. R., Larson, J. H., Rebeiz, M., Green, C. A., Heyen, D. W., Donovan, J., Windish, R., Steining, C., Mahyuddin, P., Womack, J. E., and Lewin, H. A. (2000). An ordered comparative map of the cattle and human genomes. Genome Res. 10: 1359-1368.
Band, M. R., Olmstead, C., Everts, R. E., Liu, Z. L., and Lewin, H. A. 2002. A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain. Anim Biotechnol. 13: 163-172.
Brodsky, L. I., Jacob-Hirsch, J., Avivi, A., Trakhtenbrot, L., Zeligson, S., Amariglio, N., Paz, A., Korol, A. B., Band, M., Rechavi, G., and Nevo, E. 2005. Evolutionary regulation of the blind subterranean mole rat, Spalax, revealed by genome-wide gene expression. Proc. Natl. Acad. Sci. U.S.A 102: 17047-17052.
Cash, A. C., Whitfield, C. W., Ismail, N., and Robinson, G. E. 2005. Behavior and the limits of genomic plasticity: power and replicability in microarray analysis of honeybee brains. Genes Brain Behav. 4: 267-271.
Cheon, Y., Nara, T. Y., Band, M. R., Beever, J. E., Wallig, M. A., and Nakamura, M. T. 2005. Induction of overlapping genes by fasting and a peroxisome proliferator in pigs: evidence of functional PPARalpha in nonproliferating species. Am. J. Physiol Regul. Integr. Comp Physiol 288: R1525-R1535.
Cohen-Zinder, M., Seroussi, E., Larkin, D. M., Loor, J. J., Everts-van der Wind, A., Lee, J. H., Drackley, J. K., Band, M. R., Hernandez, A. G., Shani, M., Lewin, H. A., Weller, J. I., and Ron, M. 2005. Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Res. 15: 936-944.
Everts-van der Wind, A., Kata, S. R., Band, M. R., Rebeiz, M., Larkin, D. M., Everts, R. E., Green, C. A., Liu, L., Natarajan, S., Goldammer, T., Lee, J. H., McKay, S., Womack, J. E., and Lewin, H. A. 2004. A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Res. 14: 1424-1437.
Everts, R. E., Band, M. R., Liu, Z. L., Kumar, C. G., Liu, L., Loor, J. J., Oliveira, R., and Lewin, H. A. 2005. A 7872 cDNA microarray and its use in bovine functional genomics. Vet. Immunol. Immunopathol. 105: 235-245.
Golik, M., Cohen-Zinder, M. Loor, J. J., Drackley, J. K., Band, M. R., Lewin, H. A., Weller, J. I., Ron, M., and Seroussi, E. 2006. Accelerated expansion of group IID-like phospholipase A2 genes in Bos taurus. Genomics 87: 527-533.
Grozinger, C. M., Sharabash, N. M., Whitfield, C. W., and Robinson, G. E. 2003. Pheromone-mediated gene expression in the honey bee brain. Proc. Natl. Acad. Sci.U.S.A 100 Suppl 2: 14519-14525.
Kumar, C. G., LeDuc, R., Gong, G., Roinishivili, L., Lewin, H. A., and Liu, L. 2004. ESTIMA, a tool for EST management in a multi-project environment. BMC Bioinformatics. 5: 176.
Larkin, D. M., Everts-van der Wind, A., Rebeiz, M., Schweitzer, P. A., Bachman, S., Green, C., Wright, C. L., Campos, E. J., Benson, L. D., Edwards, J., Liu, L., Osoegawa, K., Womack, J. E., de Jong, P. J., and Lewin, H. A. 2003. A cattle-human comparative map built with cattle BAC-ends and human genome sequence. Genome Res. 13: 1966-1972.
Larson, J. H., Kumar, C. G. Everts, R. E., Green, C. A., Everts-van der Wind, A., Band, M. R., and Lewin, H. A. 2006. Discovery of eight novel divergent homologs expressed in cattle placenta. Physiol Genomics 25: 405-413.
Liu, L., Gong, G., Liu, Y., Natarajan, S., Larkin, D. M., Everts-van der Wind, A., Rebeiz, M., and Beever, J. E. 2004. Multi-species comparative mapping in silico using the COMPASS strategy. Bioinformatics. 20: 148-154.
Loor, J. J., Dann, H. M., Everts, R. E., Oliveira, R., Green, C. A., Guretzky, N. A., Rodriguez-Zas, S. L., Lewin, H. A., and Drackley, J. K. 2005. Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiol., Genomics 23: 217-226.
Loor, J. J., Dann, H. M., Janovick Guretzky, N. A., Everts, R. E., Oliveira, R., Green, C. A., Litherland, N. B., Rodriguez-Zas, S. L., Lewin, H. A., and Drackley, J. K. 2006. Plane of nutrition pre-partum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling. Physiol., Genomics.
Meyers, S. N., Rogatcheva, M. B., Larkin, D. M., Yerle, M., Milan, D., Hawken, R. J., Schook, L. B., and Beever, J. E. 2005. Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics 86: 739-752.
Smith, S. L., Everts, R. E., Tian, X. C., Du, F., Sung, L. Y., Rodriguez-Zas, S. L., Jeong, B. S., Renard, J. P., Lewin, H. A., and Yang, X. 2005. Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc. Natl. Acad. Sci.U.S.A 102: 17582-17587.
Vodkin, L. O., Khanna, A., Shealy, R., Clough, S. J., Gonzalez, D. O., Philip, R., Zabala, G., Thibaud-Nissen, F., Sidarous, M., Stromvik, M. V., Shoop, E., Schmidt, C., Retzel, E., Erpelding, J., Shoemaker, R. C., Rodriguez-Huete, A. M., Polacco, J. C., Coryell, V., Keim, P., Gong, G., Liu, L., Pardinas, J., and Schweitzer, P. 2004. Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC Genomics 5: 73.
Wade, J., Peabody, C., Coussens, P., Tempelman, R. J., Clayton, D. F., Liu, L., Arnold, A. P., and Agate, R. 2004. A cDNA microarray from the telencephalon of juvenile male and female zebra finches. J. Neurosci. Methods 138: 199-206.
Wang, H., He, X., Band, M., Wilson, C., and Liu, L. 2005. A study of inter-lab and inter-platform agreement of DNA microarray data. BMC Genomics 6: 71.
Whitfield, C. W., Band, M. R., Bonaldo, M. F., Kumar, C. G., Liu, L., Pardinas, J. R., Robertson, H. M., Soares, M. B., and Robinson, G. E. 2002. Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee. Genome Res. 12: 555-566.
Whitfield, C. W., Cziko, A. M., and Robinson, G. E. 2003. Gene expression profiles in the brain predict behavior in individual honey bees. Science 302: 296-299.
Zangerl, B., Sun, Q., Pillardy, J., Johnson, J. L., Schweitzer, P. A., Hernandez, A. G., Liu, L., Acland, G. M., and Aguirre, G. D. 2006. Development and characterization of a normalized canine retinal cDNA library for genomic and expression studies. Invest Ophthalmol.Vis.Sci. 47: 2632-2638.
Zhou, Q., Band, M. R., Hernandez, A., Liu, Z. L., and Kummerow, F. A. 2004. 27-Hydroxycholesterol inhibits neutral sphingomyelinase in cultured human endothelial cells. Life Sci. 75: 1567-1577.
Ricardo M. Zayas, Alvaro Hernandez, Bianca Habermann, Yuying Wang, Joel M. Stary, and Phillip A. Newmark. The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: Analysis of ESTs from the hermaphroditic strain. 2005. PNAS, vol 102, no 51, pp18491-18496, . Online: http://www.pnas.org/cgi/reprint/0509507102 .
Ksenija Gasic, Alvaro Hernandez, Schuyler S Korban. RNA Extraction From Different Apple Tissues Rich in Polyphenols and Polysaccharides for cDNA Library Construction. 2004. Plant Molecular Biology Reporter 22: 437a–437g, ( http://pubs.nrc-cnrc.gc.ca/ispmb/r05-004.html).
In press :
Poroyko V., Spollen W.G, Hejlek L.G., Hernandez A.G., LeNoble M.E., Davis G., Nguyen H.T., Springer G.K., Sharp R.E. and Bohnert H.J. Regional transcript profiles from well-watered and water-stressed maize primary roots. Journal of Experimental Botany. (in press)
A. Levi, A. Davis, A. Hernandez, P. Wechter, J. Thimmapuram, T. Trebitsh, Y. Tadmor, N. Katzir, V. Portnoy, S. King. Genes expressed during the development and ripening of watermelon fruit. Plant Cell Reports (in press).