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Apoptosis Analysis

DNA degradation

At a late stage in the apoptotic cascade, a specific endonuclease breaks the DNA at the linkers between the nucleosomes to give large numbers of small fragments, whose sizes are oligomers of about 180 bp. The DNA strand breaks may be detected by observation of a sub-G1 peak in the DNA histogram.

DNA Degradation

Annexin V

In normal viable cells, phosphatidylserine (PS) is located on the cytoplasmic surface of the cell membrane. However, in apoptotic cells, PS is translocated from the inner to the outer leaflet of the plasma membrane, thus exposing PS to the external cellular environment.

Annexin

 

Changes in Mitochondrial Membrane Potential

DiOC6 is a green-fluorescent cationic dye that accumulates in active mitochondria and is useful in following changes in the membrane potential of the mitochondria that occur during programmed cell death.

DiOC

 

Caspase Assay

In the early stages of apoptosis cysteine-aspartic acid specific proteases called caspases are activated. The activation can occur through the intrinsic and/or extrinsic pathways. Caspases are destroying essential cellular proteins, leading to controlled cell death.

 

 

LINKS

Fluorescence Spectra of Above Dyes

Propidium Iodide/DNA
Hoechst 33258/DNA
7 AAD/DNA
DAPI/DNA
DRAQ5

 

Vendors

Molecular Probes
Sigma
Axxora (Draq5)

 

 

Software

FCS Express
Modfit LT
MultiCycle

 

 

Protocols

Ethanol FIxed, Detergent/Hypotonic Solution, Live Cells, Parafin Embedded, Apoptotic,
Wiley InterScience: Current Protocols in Flow Cytometry (exerpt)

Protocols for staining whole cells with PI and PI/ Bromodeoxyuridine
Cancer Research UK
NIEHS

Protocol for Cell Cycle for adherent cells
Arizona Research Labs

Yeast Cell CycleM
SALK Institute

Flow Cytometry Facility
Barbara Pilas, Ph.D - Director
231 Edward R. Madigan Laboratory, 1201 W. Gregory Drive, Urbana, IL 61801
Phone: (217) 244-0559     FAX: (217) 244-0446      Email: pilas@uiuc.edu

Last edited: 14 May 2007